RnoEX0004735 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69903338-69906773:-
Coord C1 exon
chr5:69906551-69906773
Coord A exon
chr5:69904495-69904716
Coord C2 exon
chr5:69903338-69903542
Length
222 bp
Sequences
Splice sites
3' ss Seq
TCCAGATTCTTCCTCTACAGTTA
3' ss Score
6.26
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
TTTTCTGCGGGTCATGAGCCGCTCAATGCCCCTCTTCATGACTCTGGCCTGGATCTACTCTGTGGCTGTGATCATCAAGAGCATTGTGTATGAGAAGGAGGCTCGGTTGAAGGAGACCATGCGCATCATGGGCCTGGACAATGGCATCCTCTGGTTTAGCTGGTTCATTAGTAGTCTCATCCCTCTGCTCGTGAGCGCTGGCCTGTTGGTGATCATCTTGAAG
Seq A exon
TTAGGAGATCTGCTGCCCTATAGTGACCCCAGCGTGGTGTTCGTCTTCCTCTCTGTGTTTGCCGTGGTGACCATTCTACAGTGCTTCCTCATTAGCACACTCTTCTCCCGGACCAACCTGGCAGCAGCCTGTGGGGGCATCATCTACTTCACGCTGTACCTGCCCTATGTGCTGTGTGTAGCATGGCAGGACTATGTGGGCTTCTCCATCAAGATCTTTGCT
Seq C2 exon
AGCCTGCTGTCTCCTGTGGCTTTTGGATTCGGCTGTGAGTATTTTGCTCTTTTTGAGGAGCAAGGCATCGGGGTCCAATGGGACAATCTCTTTAAGAGCCCAGTGGAGGAGGATGGCTTCAATCTTACCACCTCAGTGTCCATGATGCTGTTTGACACCTTCATCTATGGCGTGATGACATGGTACATCGAAGCCGTCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'22-22,'22-21,23-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(16.7=100)
A:
PF126982=ABC2_membrane_3=FE(16.5=100)
C2:
PF126982=ABC2_membrane_3=PD(13.8=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTGGATCTACTCTGTGG
R:
TTGAAGCCATCCTCCTCCACT
Band lengths:
301-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]