DreEX0009891 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6172670-6178665:+
Coord C1 exon
chr14:6172670-6172892
Coord A exon
chr14:6174875-6175096
Coord C2 exon
chr14:6178350-6178665
Length
222 bp
Sequences
Splice sites
3' ss Seq
AAATTCTTTTCCCTCTCCAGATG
3' ss Score
10.38
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
TTTTCTGCGCATTATGAGCCGCTCAATGCCACTGTTCATGACTCTGGCCTGGATGTACTCGGTGGCCATCATCATCAAAGGCGTCGTCTATGAGAAAGAGGCCCGGCTTAAGGAGACCATGAGGATTATGGGATTGGACAACGGGATCCTGTGGTTCAGCTGGTTTATTAGTAGCCTCATCCCTCTTCTCATTAGCGCAGGCTTGCTGGTTCTTCTGCTCAAG
Seq A exon
ATGGGAAATCTCCTGCCCTATAGTGACCCTGGGGTCGTCTTCCTCTTCCTCGGGTCATTTGCTGTAGTGACCATCATGCAGTGTTTCCTGATCAGCACGGCGTTTGCACGTGCCAACCTGGCAGCGGCCTGCGGGGGCATCATCTACTTCACTCTCTACCTGCCTTATGTGCTGTGCGTGGCCTGGCAGGACTATGTGGGCTTCGCCGCCAAAGTCATCGCT
Seq C2 exon
AGCTTACTGTCTCCGGTGGCGTTTGGCTTTGGCTGTGAGTATTTTGCCTTGTTTGAGGAGCAGGGTGTGGGTATTCAGTGGAATAACCTCTTCTCCAGTCCCGTGGAAGAGGACGATTACAACCTCACCACCTGCCTCATCCTCATGTACTTTGATGCCTTCCTGTATGGGGTCATGACCTGGTACATAGAAACGGTGTTCCCAGGACAGTATGGCATTCCCAGGCCATGGTACTTCCCTTTCACTAAATCCTACTGGTTTGGAGAGAACAGCACAAACAATACTGCAATACACGGAAAGAAGAGCAATGCAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'20-23,'20-22,21-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(22.4=100)
A:
PF126982=ABC2_membrane_3=FE(22.1=100)
C2:
PF126982=ABC2_membrane_3=PD(18.5=57.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGGGATCCTGTGGTTCAG
R:
TACTGTCCTGGGAACACCGTT
Band lengths:
297-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]