GgaEX1005322 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54574121-54575605:-
Coord C1 exon
chrZ:54575383-54575605
Coord A exon
chrZ:54574934-54575155
Coord C2 exon
chrZ:54574121-54574325
Length
222 bp
Sequences
Splice sites
3' ss Seq
CACCTGTTGTTCTCTTCCAGATG
3' ss Score
11.93
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
ATTTCTGCGTGTCATGAGCCGTTCCATGCCTCTCTTCATGACTCTAGCCTGGATCTACTCAGTGGCTGTGATAATTAAGGGCATTGTGTATGAGAAGGAAGCCCGGCTAAAGGAAACAATGAGGATTATGGGCCTTGACAATGGCATCCTTTGGCTAAGCTGGTTCATTAGCAGCCTCATCCCTCTCCTCATGAGTGCAGGTCTGCTGGTGCTGATCCTCAAG
Seq A exon
ATGGGGAATCTGCTGCCTTACAGTGACCCTAGTGTGGTGTTCGTTTTCCTCTCAATCTTTGGCATTGTGACCATCCTGCAGTGCTTTCTCATCAGCACCGTGTTCTCCAGGGCCAACCTGGCAGCTGCCTGTGGAGGCATTGTGTATTTCACTCTATACCTACCCTACGTGCTGTGTGTTGCCTGGCAGGACTATGTCAGCTTCTCGCTCAAGATCTTTGCG
Seq C2 exon
AGCCTGTTATCTCCAGTAGCCTTTGGCTTTGGTTGCGAGTACTTTGCACTGTTTGAAGAGCAGGGAGTTGGTGTTCAGTGGGACAACTTCTTTGAGAGCCCACTAGAAGAAGATGGCTTTAGCATCACCACATCTGCTGTAATGATGTTGTTTGACACGTTCCTCTATGGGGTCATGACCTGGTACATTGAGTCTGTCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(29.7=100)
A:
PF126982=ABC2_membrane_3=FE(29.3=100)
C2:
PF126982=ABC2_membrane_3=PD(24.5=88.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCCGGCTAAAGGAAACA
R:
ACCCCATAGAGGAACGTGTCA
Band lengths:
299-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]