MmuEX6093477 @ mm10
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53080766-53083939:-
Coord C1 exon
chr4:53083717-53083939
Coord A exon
chr4:53081922-53082062
Coord C2 exon
chr4:53080766-53080970
Length
141 bp
Sequences
Splice sites
3' ss Seq
CCATGGTGACCATCCTACAGTGC
3' ss Score
3.14
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TTTTCTGCGGGTCATGAGCCGGTCAATGCCCCTCTTCATGACTCTAGCCTGGATCTACTCTGTCGCTGTGATCATCAAGAGCATTGTGTATGAGAAGGAGGCTCGGCTGAAGGAGACCATGCGGATCATGGGTCTGGACAATGGCATCCTCTGGTTTAGCTGGTTTGTTAGCAGCCTCATCCCTCTGCTTGTGAGCGCTGGCCTGCTGGTGGTCATCTTGAAG
Seq A exon
TGCTTCCTCATTAGCACGCTCTTCTCCCGTGCCAACCTGGCAGCAGCCTGTGGGGGCATCATCTACTTCACGCTGTACCTGCCCTATGTGCTGTGCGTAGCCTGGCAGGACTATGTGGGCTTCTCCATCAAGATCTTTGCT
Seq C2 exon
AGCCTGCTGTCTCCTGTGGCTTTTGGATTCGGCTGTGAGTATTTCGCCCTTTTCGAGGAGCAAGGTATCGGGGTCCAATGGGACAATCTCTTTGAGAGCCCGGTGGAGGAGGACGGCTTCAATCTCACCACTGCAGTGTCCATGATGCTCTTTGACACCTTTCTCTATGGCGTGATGACATGGTACATCGAAGCCGTCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'23-28,'23-27,24-28
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(16.5=100)
A:
PF126982=ABC2_membrane_3=FE(16.3=100)
C2:
PF126982=ABC2_membrane_3=PD(13.6=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGAGACCATGCGGATCA
R:
TGAGATTGAAGCCGTCCTCCT
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types