DreEX6033538 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51964753-51966821:+
Coord C1 exon
chr1:51964753-51964975
Coord A exon
chr1:51965521-51965742
Coord C2 exon
chr1:51966617-51966821
Length
222 bp
Sequences
Splice sites
3' ss Seq
AACACCAAATTTTTTTTCAGATG
3' ss Score
7.67
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TTTCCTGCGGGTCATGAGCCGCTCCATGCCTCTCTTCATGACTCTGGCCTGGATGTACTCGGTGGCCATCATCATCAAGGGTGTGGTGTATGAAAAAGAGGCCCGACTCAAGGAGACCATGCGGATCATGGGTCTGGATAACGGCATCTTGTGGCTGAGCTGGTTCATCAGCAGCCTGATACCACTGCTCATCAGCGCCGCCCTGCTGGTGCTCATCCTGAAG
Seq A exon
ATGGGGAATCTCCTGCCGTACAGCGACCCCGGCGTCATCTACTTGTTCTTGTCCTCTTTTGCGGTGGTGACCATCATGCAGTGTTTCCTGATCAGCACACTCTTCTCTCGTGCCAATCTTGCCGCCGCCTGCGGAGGCATCATTTACTTCACGCTTTACCTGCCCTATGTGCTCTGCGTCGCCTGGCAGAACTACGTGGGCTTCGGTGCCAAAATAGTAGTG
Seq C2 exon
AGTCTGCTGTCTCCAGTGGCGTTCGGCTTCGGCTGTGAGTATTTCGCTCTGTTTGAGGAGCAGGGTGTGGGCATCCAGTGGAGTAATCTGCTGTCCAGCCCCATGCAGGAGGACAGCTACAACCTGACCACCTCCATCTGCCTCATGCTCTTCGATTCGGTGCTCTACGCCGTCATGACCTGGTACATCGAGGCCGTCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(20.8=100)
A:
PF126982=ABC2_membrane_3=FE(20.6=100)
C2:
PF126982=ABC2_membrane_3=PD(17.2=88.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCCATCATCATCAAGGG
R:
AGGTGGTCAGGTTGTAGCTGT
Band lengths:
296-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]