RnoEX0004927 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12755452-12756282:-
Coord C1 exon
chr7:12756060-12756282
Coord A exon
chr7:12755735-12755956
Coord C2 exon
chr7:12755452-12755653
Length
222 bp
Sequences
Splice sites
3' ss Seq
AAGTCTTGTGCTTTTCCCAGCTA
3' ss Score
4.51
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GTTCCTGCGGGTGCTGAGCCGGTCTCTGCCTCTGTTTCTGACTCTGGCCTGGATCTACTCGGTGGCGCTCACTGTGAAGGCCGTGGTGCGCGAGAAAGAGACACGGCTGCGAGAAACCATGCGTGCGATGGGGTTGAGCCGTGCTGTGCTCTGGCTTGGTTGGTTCCTCAGCTGCCTGGGACCCTTCTTGGTCAGCGCTGCATTGTTGGTGTTAGTGCTTAAG
Seq A exon
CTAGGGAACATCCTTCCTTACAGCCACCCGGTTGTAGTCTTCCTTTTCTTGGCGGCCTTTGCGGTGGCCACCGTCGCTCAGAGTTTTCTGCTCAGTGCCTTCTTCTCCCGGGCCAACCTGGCAGCAGCCTGCGGGGGCCTAGCCTACTTCGCGCTCTACCTGCCCTATGTGCTGTGTGTCGCCTGGCGTGAGCGCCTGCCTCTGGGCGGACTCTTAGCTGTG
Seq C2 exon
AGCCTGCTGTCCCCCGTGGCCTTTGGCTTTGGATGCGAGAGCCTGGCTCTACTGGAGGAGCAGGGGGACGGGGCTCAGTGGCACAATTTGGGCACAGGCCCGGCGGAGGATGTCTTCAGCCTGGCACAGGTGTCTGCCTTCTTGTTGCTTGATGCTGTCATCTACGGCCTTGCCCTCTGGTACCTAGAGGCTGTATGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(31.0=100)
A:
PF126982=ABC2_membrane_3=FE(30.5=100)
C2:
PF126982=ABC2_membrane_3=PD(25.1=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTGTTTCTGACTCTGGC
R:
CTGTGCCCAAATTGTGCCACT
Band lengths:
293-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]