GgaEX7011366 @ galGal4
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2830996-2831842:-
Coord C1 exon
chr28:2831620-2831842
Coord A exon
chr28:2831330-2831551
Coord C2 exon
chr28:2830996-2831200
Length
222 bp
Sequences
Splice sites
3' ss Seq
CAACCCGCCTCACTTTGCAGCTG
3' ss Score
9.76
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTTCCTGCGGGTGCTGAACCGCTCGCTGCCGCTCTTCATGACGCTGGCGTGGATCTACTCGGTGGCCATGATCATCAAGGGGGTGGTGCATGAGAAGGAGGCGCGTCTCAAGGAGACCATGCGGAGCATGGGGCTGAGCAGCGGGATGCTGTGGCTCAGCTGGTTCCTCAGCAGCTTCATCCCCTTCCTCCTCAGCTCAGCTCTCCTTGTCCTCATCCTCAAG
Seq A exon
CTGGGAGACATCCTGCCCTACAGCAACCCGGCTGTCATCTTCCTCTTCCTCGGCACCTTCTCAGTGGCCACCATCTGTCAGTGTTTCCTCATCAGCACCTTCTTCCCCCGTGCCAACCTGGCCTCGGCATGCGGTGGCATCATTTACTTCTCTCTCTACCTGCCCTACGTGCTGTGTGTGGCATGGCGTGACCACGTCACCTTCCCACTCCGTGTCCTCGTG
Seq C2 exon
AGCCTGCTGTCCCCAGTGGCCTTTGGCTTTGGTTGTGAGTACTTCTCGCTGTACGAGGAGCAGGGGGTGGGCATGCAGTGGTACAACTTGGGCATCAGCCCTGTGCCGGGAGACCCCTACAGCTTCGCCATGGCCATGGGGCTGCTGCTGCTGGACGCTGTCCTCTATGGGCTGGCAGCCTGGTACATCGAGGGTGTCCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-'11-14,'11-10,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(30.8=100)
A:
PF126982=ABC2_membrane_3=FE(30.4=100)
C2:
PF126982=ABC2_membrane_3=PD(25.4=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAAGGAGACCATGCGGAG
R:
CTGCCAGCCCATAGAGGACAG
Band lengths:
296-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]