MmuEX6053257 @ mm10
Exon Skipping
Gene
ENSMUSG00000037617 | Spag1
Description
sperm associated antigen 1 [Source:MGI Symbol;Acc:MGI:1349387]
Coordinates
chr15:36200202-36211199:+
Coord C1 exon
chr15:36200202-36200361
Coord A exon
chr15:36210543-36210821
Coord C2 exon
chr15:36211100-36211199
Length
279 bp
Sequences
Splice sites
3' ss Seq
CGGTGCGCCCTTCTCTACAGCGG
3' ss Score
8.8
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AAGACCTTATCAGAGGTTGAAAGAGATCTGAAGAATTCAGAGCCTGTCTCTGAGCTCCAAACCAAAGGGAAGAGGATGGTTATTGAAGAAGTTGAAAACTCGGGAGATGAAGGTGGAAAGGGAAGCGCAGATGAGCGTGAAGATGGTGGCTCGGATGAGG
Seq A exon
CGGCCATGGGCAACATTCAGAAGAAGCTGATGGTCCGCCGGAGCGAGGGTGGCAGGCGGTCGCGGCGGGGCCGGACACCGGGGCCCCGAGCTGAGCAGCAGGGAGGCCTGCGAGAGACAGCGACGGCCAGCACCGGCGACAGTCACTACCCGGAGGAGCCGCGAGCCGCTGACAACCCCAGCGGCCTCAAGAGACGGGGCAACGAGCTGTTCCGCGGCGGGCAATTCGCAGAGGCAGCCGCGCAATACTCGGTGGCGATAGCGCAGCTGGAACCCACAG
Seq C2 exon
GAAGTGCAAATGCGGATGAGCTAAGCATCTTGTATTCAAATAGAGCGGCATGCTACCTCAAAGAAGGGAACTGCAGGGACTGCATCCAGGATTGTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037617-'18-15,'18-14,19-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.745 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(47.4=38.3)
C2:
PF134141=TPR_11=FE(43.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGAGGTTGAAAGAGATCTGAAGA
R:
CTGTTACAATCCTGGATGCAGT
Band lengths:
252-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types