RnoEX0084989 @ rn6
Exon Skipping
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:75025590-75035526:+
Coord C1 exon
chr7:75025590-75025749
Coord A exon
chr7:75034867-75035142
Coord C2 exon
chr7:75035427-75035526
Length
276 bp
Sequences
Splice sites
3' ss Seq
CCGTGCGCCCTTCCCTACAGCGG
3' ss Score
9.96
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
AAAACCTTATCAGAGGTTGAAAGAGAGCTGAAGAATTCAGAGCCTGCCTCTGAGCTCCAAACCAAAGGGAAGAGGATGGTTATTGAGGAAGTTGAAAACTCGGGAGATGAAGGTGGGAAGGGAGACGAAGATGATCATGAAGATGATGGTGTGGATATGG
Seq A exon
CGGCCATGGGCAACATCCAGAAGAAGCTGATGGTTCGGAGCCAGGGTGGCAGGCGGTCGCGGCGGGCCCGGACACCGATGCCCGGAGCGGAGCAGCAGGAAGGCCAGCCAGAGACAGGGACGGCCAGTACCAGCGACAACCACGACCTGGAGGAGCGGCGAGCCGCAGACAGTCCCGGCGACCTCAAGAGCCGCGGCAACGAGCTGTTCCGCGGTGGGCAGTTCGCTGAGGCAGCCGTACAGTACTCAGGGGCGATAGCGCAGCTGGAACCCACAG
Seq C2 exon
GAAGTGAAAATGCGGATGAGCTAAGCATCTTGTATTCAAATAGAGCGGCGTGCTACCTCAAAGAAGGAAACTGCAGGGGCTGCATCCAGGACTGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078-'17-14,'17-13,19-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.806 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(47.4=38.7)
C2:
PF134141=TPR_11=FE(43.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGAGGTTGAAAGAGAGCTGA
R:
CTGTCACAGTCCTGGATGCAG
Band lengths:
252-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]