MmuEX6056807 @ mm10
Exon Skipping
Gene
ENSMUSG00000001281 | Itgb7
Description
integrin beta 7 [Source:MGI Symbol;Acc:MGI:96616]
Coordinates
chr15:102222089-102222799:-
Coord C1 exon
chr15:102222641-102222799
Coord A exon
chr15:102222342-102222437
Coord C2 exon
chr15:102222089-102222178
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTTCCCTCCCTGCCTCAGGAC
3' ss Score
9.63
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAACAGATTGGCTGGAGAAATGTCTCCCGTCTTCTAGTGTTCACTTCAGACGATACATTCCACACAGCTGGGGATGGGAAACTGGGTGGCATTTTCATGCCCAGCGACGGGCGGTGCCATCTGGACAGCAATGGTGTCTACACGAACAGCGCAGAGTTT
Seq A exon
GACTATCCCTCTGTGGGTCAAGTAGCCCAGGCCCTCACTGCAGCGAATATCCAACCTATCTTTGCTGTCACCGGTGCAACACTGCCTGTGTATCAG
Seq C2 exon
GAGCTGAGACAGTTGATTCCCAAGTCTGCTGTCGGGGAGCTGAGTGAGGACTCCAGCAATGTGGTGCAGCTCATCATGGATGCTTATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001281-'18-13,'18-12,20-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(12.2=100)
A:
PF0036213=Integrin_beta=FE(7.3=100)
C2:
PF0036213=Integrin_beta=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGAAACTGGGTGGCATT
R:
AGCATCCATGATGAGCTGCAC
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types