BtaEX6020384 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018993 | ITGB7
Description
Bos taurus integrin, beta 7 (ITGB7), mRNA. [Source:RefSeq mRNA;Acc:NM_001105365]
Coordinates
chr5:26968517-26969284:+
Coord C1 exon
chr5:26968517-26968675
Coord A exon
chr5:26968923-26969018
Coord C2 exon
chr5:26969195-26969284
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTCCCCACTCCTTGCTCCAGGAC
3' ss Score
7.9
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
AAGCAGATTGGCTGGAGAAATGTGTCCCGCCTGCTGGTGTTCACGTCAGATGACACATTCCACACAGCTGGGGACGGCAAGCTGGGCGGCATCTTCATGCCCAGCGACGGACACTGCCACTTGGACAGCAATGGCCTCTACAGTCGCAGCCCAGAGTTT
Seq A exon
GACTACCCTTCTGTGGGTCAAGTAGCCCAGGCCCTGTCTGCGGCAAACATTCAGCCCATCTTTGCTGTCACCAGTGCCACACTACCTGTCTACCGG
Seq C2 exon
GAGCTGAGTAACCTGATTCCCAAGTCTGCAGTGGGGGAGCTGAGTGAGGACTCCAGCAATGTGGTGCAGCTCATCATGGATGCTTATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018993-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(12.1=100)
A:
PF0036213=Integrin_beta=FE(7.2=100)
C2:
PF0036213=Integrin_beta=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACATTCCACACAGCTGG
R:
CCACATTGCTGGAGTCCTCAC
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]