RnoEX0045253 @ rn6
Exon Skipping
Gene
ENSRNOG00000012208 | Itgb7
Description
integrin subunit beta 7 [Source:RGD Symbol;Acc:2929]
Coordinates
chr7:143827101-143827918:-
Coord C1 exon
chr7:143827760-143827918
Coord A exon
chr7:143827439-143827534
Coord C2 exon
chr7:143827101-143827190
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCTTCCTTGCCTCAGGAC
3' ss Score
10
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAGCAGATTGGCTGGAGAAATGTGTCCCGGCTTCTGGTGTTCACTTCAGACGATACGTTCCACACAGCTGGGGATGGGAAACTGGGTGGCATTTTCATGCCCAGCGATGGGCGGTGCCACCTGGACAGCAACGGTGTCTACACTAACAGCGCAGAGTTT
Seq A exon
GACTATCCCTCTGTGGGCCAAGTAGCCCAGGCTCTCACAGCAGCGAATATCCAACCTATCTTTGCTGTCACCGGCGCAACACTGCCCGTGTATCAG
Seq C2 exon
GAGCTGAGCCAGTTGATTCCCAAGTCTGCTGTCGGGGAGCTCAGCGAAGACTCCAGCAATGTGGTGCAGCTCATCATGGATGCTTACGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012208-'10-6,'10-5,11-6
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(12.1=100)
A:
PF0036213=Integrin_beta=FE(7.2=100)
C2:
PF0036213=Integrin_beta=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACGTTCCACACAGCTGGG
R:
ACATTGCTGGAGTCTTCGCTG
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]