MmuEX6056807 @ mm9
Exon Skipping
Gene
ENSMUSG00000001281 | Itgb7
Description
integrin beta 7 [Source:MGI Symbol;Acc:MGI:96616]
Coordinates
chr15:102052520-102053230:-
Coord C1 exon
chr15:102053072-102053230
Coord A exon
chr15:102052773-102052868
Coord C2 exon
chr15:102052520-102052609
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTTCCCTCCCTGCCTCAGGAC
3' ss Score
9.63
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAACAGATTGGCTGGAGAAATGTCTCCCGTCTTCTAGTGTTCACTTCAGACGATACATTCCACACAGCTGGGGATGGGAAACTGGGTGGCATTTTCATGCCCAGCGACGGGCGGTGCCATCTGGACAGCAATGGTGTCTACACGAACAGCGCAGAGTTT
Seq A exon
GACTATCCCTCTGTGGGTCAAGTAGCCCAGGCCCTCACTGCAGCGAATATCCAACCTATCTTTGCTGTCACCGGTGCAACACTGCCTGTGTATCAG
Seq C2 exon
GAGCTGAGACAGTTGATTCCCAAGTCTGCTGTCGGGGAGCTGAGTGAGGACTCCAGCAATGTGGTGCAGCTCATCATGGATGCTTATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001281-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(12.2=100)
A:
PF0036213=Integrin_beta=FE(7.3=100)
C2:
PF0036213=Integrin_beta=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGAAACTGGGTGGCATT
R:
AGCATCCATGATGAGCTGCAC
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: