MmuEX6061317 @ mm10
Exon Skipping
Gene
ENSMUSG00000000325 | Arvcf
Description
armadillo repeat gene deleted in velo-cardio-facial syndrome [Source:MGI Symbol;Acc:MGI:109620]
Coordinates
chr16:18348182-18389390:+
Coord C1 exon
chr16:18348182-18348456
Coord A exon
chr16:18352786-18352837
Coord C2 exon
chr16:18389160-18389390
Length
52 bp
Sequences
Splice sites
3' ss Seq
ATCCTCTGGTTTCTCTACAGGAA
3' ss Score
10.99
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
AGTTGGATGGGGCGGGGCGGAGGCCTCGTCTCCGGCCAGGTCCGCTTTGCGCACGGGCAGCGGGAGGGGTAGGAGGGCTAGCCTGCTTGCTGGCTGCTCCAGTAGGGGAGGAGGAGTGTTCCCCCCCTCACCTCCTCACAAGCACAAGTTGTGGCCCCGGGAGCCACTTTCGGTGCTGGGCGCTGGAGAGGCCGCTCCCCGCGCACCGGGGGACCTGGGGACGCCTGTCTTGGGGGCGGAGGCCGCGCTGCGGAGCCGCCCACGCCGCGCGCCAG
Seq A exon
GAACAGAGTCCACAAGATGGGTGTTAGGACATGCTGAGATCCCCCGAAATAG
Seq C2 exon
GCTGCTGGCACCCTGGTCATGGAGGACTGCAACGTGCATTCGGCCGCCAGCATTTTGGCCTCGGTGAAGGAACAGGAGGCCCGTTTCGAGCGGCTGACACGGGCACTAGAACAAGAACGGCGCCATGTTGCCCTGCAGCTGGAGCGTGCCCAGCAGCCTGGCATGAGCAGTGGTGGTATGGTGGGCAGTGGGCAGCCCCTGCCAATGGCCTGGCAGCAGCTGGTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000325-'1-9,'1-1,4-9=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.775
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCACTTTCGGTGCTGG
R:
GTTGCAGTCCTCCATGACCAG
Band lengths:
148-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types