RnoEX6057773 @ rn6
Exon Skipping
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86754012-86793791:-
Coord C1 exon
chr11:86793592-86793791
Coord A exon
chr11:86789235-86789286
Coord C2 exon
chr11:86754012-86754242
Length
52 bp
Sequences
Splice sites
3' ss Seq
ATCTTCTGGTTTCTCTACAGGAA
3' ss Score
11.48
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GGGAGGGCTAGCCTGCTGGCTGCTTGGGGTAGGGGAGGAGGAGGGTTTTCCCCAACCCCCGCACCCGCATAAGTTGTGGCCCCGGGAGCCGCATTCGGTGCAGGACGCTGGAGAGGCCGCTCCCCGCGCGCCGGGAGACCTGGGGACGCCAGTCTTGGGGGCGGAGGCCGCGCTGCGGAGCCGCCCACGCCGCGCGCCAG
Seq A exon
GAACAGAGTCCACAAGATGGGCATTAGGACATGCTGAGACCCCCTGAAATAG
Seq C2 exon
GCTGCTGGCACCCTGGTCATGGAGGACTGCAATGTGCATTCGGCCGCCAGCATTCTGGCCTCGGTGAAAGAACAGGAGGCCCGATTCGAGCGGCTGACACGGGCACTAGAGCAAGAACGGCGCCACGTCGCCCTGCAGCTGGAGCGTGCCCAGCAGCCTGGCATGAGCAGTGGTGGTATGGTGGGCAGTGGGCAGCCCCTGCCAATGGCCTGGCAGCAGCTGGTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888-'0-7,'0-1,3-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.775
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCGGTGCAGGACGCTG
R:
GCACATTGCAGTCCTCCATGA
Band lengths:
146-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]