MmuEX6062634 @ mm9
Exon Skipping
Gene
ENSMUSG00000033177 | Tmprss7
Description
transmembrane serine protease 7 [Source:MGI Symbol;Acc:MGI:2686594]
Coordinates
chr16:45667665-45674092:-
Coord C1 exon
chr16:45673986-45674092
Coord A exon
chr16:45669566-45669702
Coord C2 exon
chr16:45667665-45667772
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTCGGCTCTTGTCTCCTCAGGTA
3' ss Score
11.2
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
ACTTCCCTATCAACTCTCGGCATAGCCCTGAAATTCTACAACTATTCCATAACTAAGAAGAGTGCAAAAGGCTGTGAGCACGGCTGGTGGGAGATTAATGAACACAT
Seq A exon
GTACTGCGGCTCCTACATGGATCATGAGACCATTTTCCGGGTGCCCAGCCCCCTGGTCCACATCCAGCTCCAATGCAGTTCCAGGCTTTCAGACAAGCCACTCTTGGTAGAATATGGCGGTTACAACATCAGTCAAC
Seq C2 exon
CGTGTCCTGCAGGATCTTTTAGGTGCTCCTCCGGTTTGTGTGTCCCTCAGGCCCAGCGTTGTGACGGAGTGAATGACTGTTTCGACGAAAGTGATGAACTTTTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033177-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(33.0=100)
A:
PF0043115=CUB=PD(31.1=70.2),PF0005713=Ldl_recept_a=PU(2.7=2.1)
C2:
PF0005713=Ldl_recept_a=PD(94.6=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCCTATCAACTCTCGGCA
R:
TCATCACTTTCGTCGAAACAGTCA
Band lengths:
204-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: