MmuEX6062634 @ mm10
Exon Skipping
Gene
ENSMUSG00000033177 | Tmprss7
Description
transmembrane serine protease 7 [Source:MGI Symbol;Acc:MGI:2686594]
Coordinates
chr16:45667552-45673979:-
Coord C1 exon
chr16:45673873-45673979
Coord A exon
chr16:45669453-45669589
Coord C2 exon
chr16:45667552-45667659
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTCGGCTCTTGTCTCCTCAGGTA
3' ss Score
11.2
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
ACTTCCCTATCAACTCTCGGCATAGCCCTGAAATTCTACAACTATTCCATAACTAAGAAGAGTGCAAAAGGCTGTGAGCACGGCTGGTGGGAGATTAATGAACACAT
Seq A exon
GTACTGCGGCTCCTACATGGATCATGAGACCATTTTCCGGGTGCCCAGCCCCCTGGTCCACATCCAGCTCCAATGCAGTTCCAGGCTTTCAGACAAGCCACTCTTGGTAGAATATGGCGGTTACAACATCAGTCAAC
Seq C2 exon
CGTGTCCTGCAGGATCTTTTAGGTGCTCCTCCGGTTTGTGTGTCCCTCAGGCCCAGCGTTGTGACGGAGTGAATGACTGTTTCGACGAAAGTGATGAACTTTTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033177-'15-15,'15-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(33.0=100)
A:
PF0043115=CUB=PD(31.1=70.2),PF0005713=Ldl_recept_a=PU(2.7=2.1)
C2:
PF0005713=Ldl_recept_a=PD(94.6=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCCTATCAACTCTCGGCA
R:
TCATCACTTTCGTCGAAACAGTCA
Band lengths:
204-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types