GgaEX6003947 @ galGal3
Exon Skipping
Gene
ENSGALG00000015389 | E1C7W0_CHICK
Description
NA
Coordinates
chr1:91905677-91909342:+
Coord C1 exon
chr1:91905677-91905783
Coord A exon
chr1:91908481-91908617
Coord C2 exon
chr1:91909235-91909342
Length
137 bp
Sequences
Splice sites
3' ss Seq
AAATTATTGATTCCTTTTAGGTA
3' ss Score
9.05
5' ss Seq
AGCGTAAGA
5' ss Score
6.21
Exon sequences
Seq C1 exon
ACTCCGCAGAAGAACCTTGGTATAGCTCTGAAGTTTCATAACTATACCATCAGTGAGAAGAATATTAAAGGCTGTGAGCGAGGATGGTGGAAAATTAATGAACACAT
Seq A exon
GTACTGTGGTTTCTATGTTGATCACCAAACAGTCTTCCACGTTGCAAGCTCTGCTGTTAACATTGAGCTTCAGTGCAGTTCAAAGGTGTCAGAGAAGCCCCTTCTGGTGGAGTATGGCAGCTATAATATCAGCCAGC
Seq C2 exon
CATGTCCACCCGGATATTTCAAGTGTTCTACTGGCTTATGCATTCAGCAGATGCAGCGCTGTGATGGGGTAAACAACTGCTTCGATGAAAGTGATGAACTCTTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015389-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(31.5=100)
A:
PF0043115=CUB=PD(34.2=80.9),PF0005713=Ldl_recept_a=PU(2.7=2.1)
C2:
PF0005713=Ldl_recept_a=PD(94.6=94.6),PF0005713=Ldl_recept_a=PU(5.4=5.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCGCAGAAGAACCTTGGT
R:
AAGAGTTCATCACTTTCATCGAAGC
Band lengths:
210-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]