BtaEX6000892 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015065 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:57248526-57255100:+
Coord C1 exon
chr1:57248526-57248632
Coord A exon
chr1:57252986-57253122
Coord C2 exon
chr1:57254993-57255100
Length
137 bp
Sequences
Splice sites
3' ss Seq
CCCCCAACCCTTGCTGGCAGGTA
3' ss Score
7.2
5' ss Seq
AACGTAAGA
5' ss Score
7.69
Exon sequences
Seq C1 exon
TCTCCCCTGTCAACTCTTGGCATAGCACTGAAATTCCATAACTATTCAATAACCAAGAAGAGTATGAAAGGCTGTGACCATGGATGGTGGGAAATTAATGACCACAC
Seq A exon
GTACTGCGGCTCCTACATGGATCACCAGACGATTTTCCGAGTGCCCAGTCCTCTGGTTCACATTCAGCTGCAGTGCAGTTCAAGGCTTTCGGACAAGCCGCTTTTGGTGGAATATGGCAGTTACAACATCAGTCAAC
Seq C2 exon
CCTGTCCTGTTGGATCTTTTAGATGCTCCTCCGGTGTGTGTGTCCCTCAGGCCCAGCGATGTGATGGAGTAAATGACTGCTTTGATGAAAGCGATGAACTCTTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015065-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(32.4=100)
A:
PF0043115=CUB=PD(32.4=74.5),PF0005713=Ldl_recept_a=PU(2.7=2.1)
C2:
PF0005713=Ldl_recept_a=PD(94.6=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTGTCAACTCTTGGCAT
R:
CACAGAAGAGTTCATCGCTTTCA
Band lengths:
213-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]