DreEX6094963 @ danRer10
Exon Skipping
Gene
ENSDARG00000086161 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr24:21703412-21706393:-
Coord C1 exon
chr24:21706287-21706393
Coord A exon
chr24:21703659-21703795
Coord C2 exon
chr24:21703412-21703519
Length
137 bp
Sequences
Splice sites
3' ss Seq
CACTGTAATTTGATTTACAGATA
3' ss Score
7.34
5' ss Seq
AGCGTAAGA
5' ss Score
6.21
Exon sequences
Seq C1 exon
GCGGTCAGTGGTTCTCTGGGTGTGGCTCTCAGGTTCCAGAATTACATGCTAAAGCTAAAAGACTCACAGAATTGTGAACACGGCTGGTGGAAAGTCAATGAGATTAT
Seq A exon
ATACTGTGGAAATTACGTTGACCACTCAACCGTCTTCCGTATTCCTGCGCAAAACCCTGAAGTGGTTTTCCGCTGCAGCTCACGAAACGCTGACCAGCCCTTCAGTGCCACTTACAGCAGCTACAACACCAGCCAGC
Seq C2 exon
CATGTCCAGACACCCACTTCCTGTGCTCCACGGGTCTGTGTGTGGAGAAATCCAAGCGCTGTGATGGACTGGATGACTGTCAGGATGAAAGCGATGAGATTTTCTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086161-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(34.7=100)
A:
PF0043115=CUB=PD(37.6=80.9),PF0005713=Ldl_recept_a=PU(2.7=2.1)
C2:
PF0005713=Ldl_recept_a=PD(94.6=94.6),PF0005713=Ldl_recept_a=PU(2.9=2.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGTGGTTCTCTGGGTGTG
R:
ACAGAAAATCTCATCGCTTTCATCC
Band lengths:
211-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]