RnoEX6056994 @ rn6
Exon Skipping
Gene
ENSRNOG00000002145 | Tmprss7
Description
transmembrane serine protease 7 [Source:RGD Symbol;Acc:1304655]
Coordinates
chr11:60122059-60128507:+
Coord C1 exon
chr11:60122059-60122165
Coord A exon
chr11:60126816-60126952
Coord C2 exon
chr11:60128400-60128507
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTTGATTCTTGTCTCCTCAGGTA
3' ss Score
9.94
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
ACTTCTCTATCAACTCTTGGCATAGCCCTAAAATTCCACAACTATTCCATAACTAAGAAGAGTATGAAAGGCTGTGAGCATGGCTGGTGGGAAATTAATGAACACAT
Seq A exon
GTACTGTGGCTCCTACATGGATCATGAGACGATTTTCCGGGTGCCCAGCCCCCTGGTCCACATCCAGCTCCAGTGCAGTTCCAGGCTTTCAGACAAGCCACTTTTGGTAGAATATGGCAGTTACAACATCAGTCAAC
Seq C2 exon
CTTGTCCTGCTGGATCTTTTAGATGCTCCTCCGGTTTATGTGTCCCTCAGGCCCAGCGCTGTGATGGAGTGAATGACTGTTTTGATGAAAGTGATGAACTTTTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002145-'18-18,'18-16,20-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(33.3=100)
A:
PF0043115=CUB=PD(30.5=68.1),PF0005713=Ldl_recept_a=PU(2.7=2.1)
C2:
PF0005713=Ldl_recept_a=PD(94.6=94.6)
Main Skipping Isoform:
ENSRNOT00000045521fB15390
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTCTATCAACTCTTGGCATAGC
R:
TCATCACTTTCATCAAAACAGTCA
Band lengths:
204-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]