MmuEX6063639 @ mm10
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96825498-96833493:-
Coord C1 exon
chr16:96833347-96833493
Coord A exon
chr16:96829891-96830158
Coord C2 exon
chr16:96825498-96825773
Length
268 bp
Sequences
Splice sites
3' ss Seq
GTTTCATTTTTCTTCCACAGACC
3' ss Score
12
5' ss Seq
CCTGTACGT
5' ss Score
5.32
Exon sequences
Seq C1 exon
GATCTAGATTTCTCATCACATCCACGGGAGCCTTGTATATTAAAGATGTACAGAACGAAGATGGGCTGTACAACTACCGCTGCATCACGCGGCACAGATACACAGGGGAGACGAGACAAAGCAACAGCGCGAGACTGTTCGTGTCAG
Seq A exon
ACCCAGCAAACTCAGCCCCATCCATCCTGGACGGGTTTGACCACCGCAAAGCCATGGCAGGGCAGCGCGTGGAGCTGCCTTGCAAAGCACTTGGGCACCCCGAGCCAGACTACCGCTGGCTGAAGGACAACATGCCCCTGGAACTTTCTGGAAGGTTCCAAAAGACAGTGACTGGGTTGCTCATTGAGAACAGCCGCCCCTCAGACTCAGGCAGCTATGTGTGTGAAGTATCCAACCGATATGGCACTGCCAAGGTGATAGGCCGCCT
Seq C2 exon
AGCCACTGAAAGCCACCATCAGTCCCAGAAAGGTTAAAAGCAGCGTGGGCAGCCAGGTCTCCTTATCCTGCAGTGTGACAGGAAATGAAGACCAGGAACTCTCCTGGTACCGAAATGGCGAAATCCTCAACCCTGGAAAAAACGTGAGGATCACAGGACTCAACCACGCAAACCTTATAATGGATCACATGGTCAAGAGTGATGGGGGTGCCTACCAGTGCTTTGTGCGCAAGGACAAGCTATCTGCTCAAGACTATGTCCAGGTGGTCCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'10-10,'10-9,11-10
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(47.5=94.0)
A:
PF0767911=I-set=WD(100=91.5)
C2:
PF0767911=I-set=WD(100=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGGGGAGACGAGACAAA
R:
CAGATAGCTTGTCCTTGCGCA
Band lengths:
294-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types