GgaEX1021055 @ galGal3
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
NA
Coordinates
chr1:111858537-111866961:-
Coord C1 exon
chr1:111866815-111866961
Coord A exon
chr1:111861120-111861398
Coord C2 exon
chr1:111858537-111858812
Length
279 bp
Sequences
Splice sites
3' ss Seq
GAAAATCTCTGTTCTTTCAGATC
3' ss Score
9.11
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
GACCTAGATTTCTCATCACATCCACGGGAGCCTTGTATATTTTAGACGTACAGAATGAAGACGGACTGTACAACTACCGATGTATCACAAGGCACAGATACACTGGAGAAACACGACAAAGCAACAGTGCAAGACTTTTTGTATCAG
Seq A exon
ATCCAGCGAATTCAGCTCCATCTATTCTAGATGGGTTTGACCACCGTAAAGCCATGGCAGGACAGCGAGTGGAGCTGCCTTGCAAAGCATCAGGGCACCCCACACCAAAGTATCGTTGGCTGAAGGACAACATTCCCTGGGAGCCTGACAGCAGGTTTCGGCAGACAGTTACAGGTCTGCTGATAGAGAACACACGTCCCTCAGACTCAGGCAACTATGTCTGCGAGGTGTGGAACAACTATGGTACTGCCGAGATGATAGGGCGACTGTATGTAAAAC
Seq C2 exon
AACCACTAAAAGCCACAATCAGCCCACGGAAAGTAAAAAGCAGTGTTGGTAGTCAAGTGTCCTTGTCCTGCAGTGTGACAGGAACAGAGGACCAAGAGCTCTCATGGTACCGTAATGGTGAAATCATTAACCCCGGTAACAATGTTCGGATCACTGGGATCAACCGGGAGAACCTTATCATGGATGGCATGGCTAAGAGTGATGGTGGAGCATACCAGTGCTTTGTGCGCAAGGACAAGATGTCCGCTCAAGACTATGTTCAAGTAATACTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'2-3,'2-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.053 C2=0.032
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(47.5=94.0)
A:
PF0767911=I-set=WD(100=91.5)
C2:
PF0767911=I-set=WD(100=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCACGGGAGCCTTGTAT
R:
CTCCCGGTTGATCCCAGTGAT
Band lengths:
300-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]