GgaEX1021055 @ galGal4
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107768763-107777187:-
Coord C1 exon
chr1:107777041-107777187
Coord A exon
chr1:107771346-107771624
Coord C2 exon
chr1:107768763-107769038
Length
279 bp
Sequences
Splice sites
3' ss Seq
GAAAATCTCTGTTCTTTCAGATC
3' ss Score
9.11
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
GACCTAGATTTCTCATCACATCCACGGGAGCCTTGTATATTTTAGACGTACAGAATGAAGACGGACTGTACAACTACCGATGTATCACAAGGCACAGATACACTGGAGAAACACGACAAAGCAACAGTGCAAGACTTTTTGTATCAG
Seq A exon
ATCCAGCGAATTCAGCTCCATCTATTCTAGATGGGTTTGACCACCGTAAAGCCATGGCAGGACAGCGAGTGGAGCTGCCTTGCAAAGCATCAGGGCACCCCACACCAAAGTATCGTTGGCTGAAGGACAACATTCCCTGGGAGCCTGACAGCAGGTTTCGGCAGACAGTTACAGGTCTGCTGATAGAGAACACACGTCCCTCAGACTCAGGCAACTATGTCTGCGAGGTGTGGAACAACTATGGTACTGCCGAGATGATAGGGCGACTGTATGTAAAAC
Seq C2 exon
AACCACTAAAAGCCACAATCAGCCCACGGAAAGTAAAAAGCAGTGTTGGTAGTCAAGTGTCCTTGTCCTGCAGTGTGACAGGAACAGAGGACCAAGAGCTCTCATGGTACCGTAATGGTGAAATCATTAACCCCGGTAACAATGTTCGGATCACTGGGATCAACCGGGAGAACCTTATCATGGATGGCATGGCTAAGAGTGATGGTGGAGCATACCAGTGCTTTGTGCGCAAGGACAAGATGTCCGCTCAAGACTATGTTCAAGTAATACTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'6-9,'6-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.053 C2=0.032
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(58.0=94.0)
A:
PF0767911=I-set=WD(100=91.5)
C2:
PF0767911=I-set=WD(100=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCACGGGAGCCTTGTAT
R:
CTCCCGGTTGATCCCAGTGAT
Band lengths:
300-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]