DreEX6075123 @ danRer10
Exon Skipping
Gene
ENSDARG00000028118 | dscamb
Description
Down syndrome cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-031118-67]
Coordinates
chr15:6250157-6259822:-
Coord C1 exon
chr15:6259676-6259822
Coord A exon
chr15:6256247-6256525
Coord C2 exon
chr15:6250157-6250432
Length
279 bp
Sequences
Splice sites
3' ss Seq
ATATTCATACTTTCTTTCAGAAC
3' ss Score
9.62
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
GATCAAGATATCTTATTACATCCACGGGGGCCTTGTATATTCTGGATGTGCAGTCGGAGGATGCGGTGAATATTTATCGCTGTACCACGCGGCACCGATACACAGGGGAGACCAGACAGAGTAACAGTGCCCGACTGCTTTTATCAG
Seq A exon
AACCTGTGGATTCTGCTCCGGTGATTCTGGATGGGTTTGAACGGAAGGAGGTTATGGTGGGTCATCGGGTGGAGCTCCCATGTAAAGCATCTGGTCACCCTCCGCCCAGGTATCGCTGGCTGAGAGACAACAGTCCATTGGAATCAGATAGCCGGTACCATCAGAGTGTATCAGGCCTCCTCATCGAGGCCACACGACCCAGCGATGCAGGCAGTTATGTGTGTGAGGTGTGGAACAGCTTCGGAAATGCCAAAGTGGTCGGACGGCTGGTTGTCAAAC
Seq C2 exon
AGCCTCTGAAAGCAGTGGTGAGCCCACGGAAGGTGAGGGGCAGCGTGGGTAGCCAAGTGTCTCTGTTCTGTAGTGTGACTGGCTCAGACGAGTTTGACATCACCTGGTACAGGAATGCGGAGAAGATCTATCAGGGTATAAATGTACGAATCACGGGCATTAACAACGAGAACCTGGTGATGGAGGGAATGGCCAAGAGCGATGGAGGAGCGTATCAGTGCTTTGCTCGAAATGGAAAGATGTCCACCCAAGACTTAGTTCAGGTCGTCTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028118-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(50.0=94.0)
A:
PF0767911=I-set=WD(100=91.5)
C2:
PF0767911=I-set=WD(100=95.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGGAGGATGCGGTGAATA
R:
CTTGGCCATTCCCTCCATCAC
Band lengths:
293-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]