RnoEX6056693 @ rn6
Exon Skipping
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37245991-37253776:-
Coord C1 exon
chr11:37253614-37253776
Coord A exon
chr11:37250248-37250526
Coord C2 exon
chr11:37245991-37246266
Length
279 bp
Sequences
Splice sites
3' ss Seq
GTTTCATTTTTCTTCTGCAGACC
3' ss Score
11.5
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
CTCTCATCTGTTTCAGGATCTAGATTTCTCATCACATCCACGGGAGCCTTGTATATTAAAGATGTACAGAACGAAGATGGGCTGTACAACTACCGCTGCATCACGCGGCACAGATACACAGGGGAGACGAGACAAAGCAACAGCGCGAGACTGTTCGTGTCAG
Seq A exon
ACCCAGCGAACTCAGCCCCATCCATCCTGGACGGGTTTGACCACCGCAAAGCCATGGCAGGGCAGCGTGTGGAGCTGCCGTGCAAAGCTCTTGGGCACCCCGAGCCGGACTACCGCTGGCTGAAAGATAACATGCCCCTGGAACTTTCCGGAAGGTTCCAAAAGACAGTGACCGGGCTGCTCATTGAGAACAGCCGCCCTTCAGACTCAGGCAGCTACGTGTGTGAAGTATCCAACCGATACGGCACTGCCAAGGTGATAGGCCGCCTGTACGTGAAAC
Seq C2 exon
AGCCACTGAAAGCCACCATCAGTCCCAGAAAGGTTAAAAGCAGTGTGGGCAGCCAGGTCTCCTTGTCCTGCAGTGTGACAGGAAACGAAGACCAGGAGCTCTCCTGGTACAGAAATGGTGAAATCCTCAACCCTGGGAAAAACGTGAGGATCACAGGACTCAACCACGCGAACCTTATAATGGATCACATGGTCAAGAGTGATGGGGGCGCCTACCAGTGCTTTGTTCGCAAGGACAAGCTATCTGCTCAAGACTATGTCCAGGTGGTCCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
83%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0767911=I-set=WD(100=91.5)
C2:
PF0767911=I-set=WD(100=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACAGATACACAGGGGAGA
R:
TGTCCTTGCGAACAAAGCACT
Band lengths:
294-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]