MmuEX6063639 @ mm9
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:97047105-97055100:-
Coord C1 exon
chr16:97054954-97055100
Coord A exon
chr16:97051487-97051765
Coord C2 exon
chr16:97047105-97047380
Length
279 bp
Sequences
Splice sites
3' ss Seq
GTTTCATTTTTCTTCCACAGACC
3' ss Score
12
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
GATCTAGATTTCTCATCACATCCACGGGAGCCTTGTATATTAAAGATGTACAGAACGAAGATGGGCTGTACAACTACCGCTGCATCACGCGGCACAGATACACAGGGGAGACGAGACAAAGCAACAGCGCGAGACTGTTCGTGTCAG
Seq A exon
ACCCAGCAAACTCAGCCCCATCCATCCTGGACGGGTTTGACCACCGCAAAGCCATGGCAGGGCAGCGCGTGGAGCTGCCTTGCAAAGCACTTGGGCACCCCGAGCCAGACTACCGCTGGCTGAAGGACAACATGCCCCTGGAACTTTCTGGAAGGTTCCAAAAGACAGTGACTGGGTTGCTCATTGAGAACAGCCGCCCCTCAGACTCAGGCAGCTATGTGTGTGAAGTATCCAACCGATATGGCACTGCCAAGGTGATAGGCCGCCTGTACGTGAAAC
Seq C2 exon
AGCCACTGAAAGCCACCATCAGTCCCAGAAAGGTTAAAAGCAGCGTGGGCAGCCAGGTCTCCTTATCCTGCAGTGTGACAGGAAATGAAGACCAGGAACTCTCCTGGTACCGAAATGGCGAAATCCTCAACCCTGGAAAAAACGTGAGGATCACAGGACTCAACCACGCAAACCTTATAATGGATCACATGGTCAAGAGTGATGGGGGTGCCTACCAGTGCTTTGTGCGCAAGGACAAGCTATCTGCTCAAGACTATGTCCAGGTGGTCCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(47.5=94.0)
A:
PF0767911=I-set=WD(100=91.5)
C2:
PF0767911=I-set=WD(100=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGGGGAGACGAGACAAA
R:
CAGATAGCTTGTCCTTGCGCA
Band lengths:
294-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: