MmuEX6068943 @ mm9
Exon Skipping
Gene
ENSMUSG00000032604 | Qars
Description
glutaminyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:1915851]
Coordinates
chr9:108410714-108411555:+
Coord C1 exon
chr9:108410714-108410861
Coord A exon
chr9:108411208-108411317
Coord C2 exon
chr9:108411480-108411555
Length
110 bp
Sequences
Splice sites
3' ss Seq
AATTGCCCCTCCGTTTTCAGCTG
3' ss Score
10.6
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCACACCAGATTCTGGGTTCTACCATCGACAAGGCTACTGGGGTCCTCCTATATGACTTGGTCTCCCGACTCAGGGATACTCGGCGTCGTTCTTTCCTTGTGAGCTATATAGCCAATAAGAAGATTCACACGGGACTCCAGCTGAGCG
Seq A exon
CTGCTCTTGAATATGTTCGGAGTCATCCCCAGGATCCCATTGATACCAAGGACTTCGAGCAGGAGTGTGGCGTCGGTGTGGTGGTGACACCGGAGCAGATTGAGGAAGCT
Seq C2 exon
GTGGAGTCCACCATAAATAAGCATCAGTTGCAGCTCCTAGCGGAACGGTACCGTTTCAACATGGGGCTGCTAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032604-'1-4,'1-1,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.000
Domain overlap (PFAM):
C1:
PF0455810=tRNA_synt_1c_R1=FE(30.1=100)
A:
PF0455810=tRNA_synt_1c_R1=FE(22.1=100)
C2:
PF0455810=tRNA_synt_1c_R1=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATTCTGGGTTCTACCATCGAC
R:
CCATTAGCAGCCCCATGTTGA
Band lengths:
218-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: