MmuEX6068943 @ mm10
Exon Skipping
Gene
ENSMUSG00000032604 | Qars
Description
glutaminyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:1915851]
Coordinates
chr9:108508383-108509224:+
Coord C1 exon
chr9:108508383-108508530
Coord A exon
chr9:108508877-108508986
Coord C2 exon
chr9:108509149-108509224
Length
110 bp
Sequences
Splice sites
3' ss Seq
AATTGCCCCTCCGTTTTCAGCTG
3' ss Score
10.6
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCACACCAGATTCTGGGTTCTACCATCGACAAGGCTACTGGGGTCCTCCTATATGACTTGGTCTCCCGACTCAGGGATACTCGGCGTCGTTCTTTCCTTGTGAGCTATATAGCCAATAAGAAGATTCACACGGGACTCCAGCTGAGCG
Seq A exon
CTGCTCTTGAATATGTTCGGAGTCATCCCCAGGATCCCATTGATACCAAGGACTTCGAGCAGGAGTGTGGCGTCGGTGTGGTGGTGACACCGGAGCAGATTGAGGAAGCT
Seq C2 exon
GTGGAGTCCACCATAAATAAGCATCAGTTGCAGCTCCTAGCGGAACGGTACCGTTTCAACATGGGGCTGCTAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032604-'4-11,'4-9,6-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0455810=tRNA_synt_1c_R1=FE(41.6=100),PF116623=DUF3263=PD(54.4=93.9)
A:
PF0455810=tRNA_synt_1c_R1=FE(22.1=100)
C2:
PF0455810=tRNA_synt_1c_R1=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATTCTGGGTTCTACCATCGAC
R:
CCATTAGCAGCCCCATGTTGA
Band lengths:
218-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types