BtaEX6095496 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018928 | QARS
Description
glutamine--tRNA ligase [Source:RefSeq peptide;Acc:NP_001029640]
Coordinates
chr22:51484527-51485355:+
Coord C1 exon
chr22:51484527-51484674
Coord A exon
chr22:51485028-51485137
Coord C2 exon
chr22:51485280-51485355
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATCTGTTCGCTCTTTTTCAGCTG
3' ss Score
9.82
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCGCAGCAGACTCTGGGCTCCTCCATCGACAAGGCTACCGGGACCCTGCTCTATGGATTGGCCTCCCGACTCCGGGATCCTCGGCGCCTTTCTTTCCTCGTGAGCTACATAACCAGTAGGAAGATCCACACTGAGACCCAGCTGAGCG
Seq A exon
CTGCCCTTGAGTATGTGCGGAGTCATCCCTTGGATCCCATCAACACTGAGGACTTCGAGCAGGAATGCGGTGTGGGCGTTGTGGTGACCCCAGAACAGATTGAAGAGGCC
Seq C2 exon
GTGGAGGCTGCCATAAATCGCCACCGAGCCAAGCTCCTGGTAGAGCGTTACCATTTCAGCATGGGGCTGCTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018928-'4-2,'4-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0455810=tRNA_synt_1c_R1=FE(30.1=100)
A:
PF0455810=tRNA_synt_1c_R1=FE(22.1=100)
C2:
PF0455810=tRNA_synt_1c_R1=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACTCTGGGCTCCTCCATC
R:
CCATCAGCAGCCCCATGC
Band lengths:
218-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]