Special

RnoEX6037656 @ rn6

Exon Skipping

Gene
Description
glutaminyl-tRNA synthetase [Source:RGD Symbol;Acc:1359448]
Coordinates
chr8:117298323-117299146:+
Coord C1 exon
chr8:117298323-117298470
Coord A exon
chr8:117298821-117298930
Coord C2 exon
chr8:117299071-117299146
Length
110 bp
Sequences
Splice sites
3' ss Seq
AGTTGCTTTTCCTTTTTCAGCTG
3' ss Score
10.52
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCACAGCAGACTCTAGGGTCTACCATCGACAAGGCTACTGGGACCCTGCTATATGGCTTGGCCTCCCGACTCAGGGATACTCGGCGTCTTTCTTTCCTTGTGGGCTATATAGCCAATAAGAAGATCCACACTGAGCTCCAGCTGAGCG
Seq A exon
CTGCTCTTGAATATGTTCGGAGTCATCCCCTGGATCCCATTGATACCAAGGACTTCGAGCAGGAATGTGGTGTTGGTGTGGTGGTGACACCAGAGCAGATTGAGGAAGCT
Seq C2 exon
GTGGAGGCCACCATAAATAGGCATCGTCCACAGCTCTTAGTGGAACGGTACCGGTTCAGCATGGGGCTGTTAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060912-'1-5,'1-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.040 A=0.000 C2=0.058
Domain overlap (PFAM):

C1:
PF0455810=tRNA_synt_1c_R1=FE(30.1=100)
A:
PF0455810=tRNA_synt_1c_R1=FE(22.1=100)
C2:
PF0455810=tRNA_synt_1c_R1=FE(15.3=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGCAGACTCTAGGGTCT
R:
CATGCTGAACCGGTACCGTTC
Band lengths:
211-321
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]