GgaEX1047529 @ galGal4
Exon Skipping
Gene
ENSGALG00000006853 | QARS
Description
glutaminyl-tRNA synthetase [Source:RefSeq peptide;Acc:NP_001012800]
Coordinates
chr12:11581871-11582476:+
Coord C1 exon
chr12:11581871-11582123
Coord A exon
chr12:11582202-11582311
Coord C2 exon
chr12:11582401-11582476
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGAGCGCGCTGTGGCCGCAGCCG
3' ss Score
4.83
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
NNGGCGCTGGATTTGTTCACCGGCATCGGGCTGACCGAGGCCAAAGCCCGCGAGACGCTGCGCAACGCCGCGCTGAGCGCGCAGCTCCGCCAGGCCGTGCTGCAGGCCCGCGCCGCGCTGGGCTCAGGCCTGGATAAAGCCACCGGCGCTCTGCTGTACAACGCGGCCGCCCGGCTCCGCGACCCGGACCGCTTGGCCTTCGTGGTGGGGTACATCGGGCGGAGGGAGATCCGCACCGACCAACAGTTGGGCG
Seq A exon
CCGCCCTGCAGTACCTCCGCAGTCACCCGCTGGAACCGCTGGAACCGGCGGACTTCGAGCGGGCGTGCGGCGTGGGAGTGCGGGTCAGCCCCGAGCAGATCGAGGAGGCG
Seq C2 exon
GTGGAGGCCGTGGTCAGCCGGCACCGGGAGGAGCTGCTGGCGGAGCGGTACCACTTCAACACGGGGCTGCTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006853-'1-4,'1-0,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF0455810=tRNA_synt_1c_R1=PU(52.8=98.8)
A:
PF0455810=tRNA_synt_1c_R1=FE(22.6=100)
C2:
PF0455810=tRNA_synt_1c_R1=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGACCGAGGCCAAAG
R:
CAGCAGCTCCTCCCGGTG
Band lengths:
264-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]