MmuEX6069082 @ mm9
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108875858-108876501:+
Coord C1 exon
chr9:108875858-108875920
Coord A exon
chr9:108876110-108876154
Coord C2 exon
chr9:108876466-108876501
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTAGACCAATTCTTTTACAGGGT
3' ss Score
7.11
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGTGTACCAGGCATCAAAGGCGATGTGGGAGAGCCTGGAAAGAGGGGTCATGATGGCAACCCA
Seq A exon
GGTCTCCCGGGAGAGCGTGGTGTGGCTGGGCCTGAAGGGAAGCCG
Seq C2 exon
GGTCTTCAGGGCCCAAGGGGGACCCCTGGCCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'82-84,'82-83,83-84=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.6=100)
A:
PF0139113=Collagen=FE(20.0=100),PF0139113=Collagen=PU(17.5=73.3)
C2:
PF0139113=Collagen=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAGGCATCAAAGGCGAT
R:
CCCCTTGGGCCCTGAAGA
Band lengths:
80-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: