MmuEX6069097 @ mm9
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108871996-108872591:+
Coord C1 exon
chr9:108871996-108872031
Coord A exon
chr9:108872400-108872462
Coord C2 exon
chr9:108872547-108872591
Length
63 bp
Sequences
Splice sites
3' ss Seq
AACAATGATTTTCCCCCCAGGGA
3' ss Score
9.33
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGTGCTTCAGGCAAAGCTGGGGACCCGGGGAGAGAT
Seq A exon
GGACTTCCAGGCCTTCGAGGAGAACATGGCCCCCCTGGTCCCCCTGGCCCTCCTGGAGTTCCG
Seq C2 exon
GGAAAGGCAGGCGATGATGGCAAACCAGGCCTGAATGGGAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'65-68,'65-67,66-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(12.4=100)
A:
PF0139113=Collagen=FE(22.5=100),PF0139113=Collagen=PU(6.4=23.8)
C2:
PF0139113=Collagen=FE(15.7=100),PF0139113=Collagen=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGGCAAAGCTGGGGAC
R:
TTTTTCCCATTCAGGCCTGGT
Band lengths:
76-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: