MmuEX6069100 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108969423-108969739:+
Coord C1 exon
chr9:108969423-108969458
Coord A exon
chr9:108969534-108969569
Coord C2 exon
chr9:108969659-108969739
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCTGACCTTGTTCCCTCCAGGGA
3' ss Score
10.4
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCATTGATGGGCTTCGGGGACCCCCAGGCCCACAG
Seq A exon
GGAGACCCCGGTGTTCGAGGCCCAGCAGGAGACAAG
Seq C2 exon
GGTGATCGGGGACCCCCAGGGCTGGATGGCCGGAGTGGGCTGGATGGGAAACCCGGAGCCCCTGGCCCCCCAGGGCTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'57-85,'57-74,68-85=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.5=100)
A:
PF0139113=Collagen=FE(17.5=100),PF0139113=Collagen=PU(2.2=16.7)
C2:
PF0139113=Collagen=PD(17.5=40.7),PF0139113=Collagen=FE(29.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGATGGGCTTCGGGGAC
R:
CAGGGGCTCCGGGTTTCC
Band lengths:
98-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types