RnoEX6037776 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117711065-117711380:+
Coord C1 exon
chr8:117711065-117711100
Coord A exon
chr8:117711175-117711210
Coord C2 exon
chr8:117711300-117711380
Length
36 bp
Sequences
Splice sites
3' ss Seq
GCTGACCTTGTTCCCTCCAGGGA
3' ss Score
8.89
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCATTGATGGGCTTCGGGGACCCCCAGGCCCACAG
Seq A exon
GGAGACCCAGGTGTTCGAGGTCCTGCAGGAGACAAG
Seq C2 exon
GGTGATCGGGGATCCCCAGGGCTGGATGGCCGAAATGGGCTAGATGGGAAACCAGGAGCCCCTGGCCCTCCAGGGCTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'65-62,'65-61,66-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.5=100)
A:
PF0139113=Collagen=FE(17.5=100)
C2:
PF0139113=Collagen=PD(19.0=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGATGGGCTTCGGGG
R:
GGGCTCCTGGTTTCCCATCTA
Band lengths:
96-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]