MmuEX6071753 @ mm10
Exon Skipping
Gene
ENSMUSG00000015854 | Cd5l
Description
CD5 antigen-like [Source:MGI Symbol;Acc:MGI:1334419]
Coordinates
chr3:87365790-87368769:+
Coord C1 exon
chr3:87365790-87366110
Coord A exon
chr3:87367541-87367879
Coord C2 exon
chr3:87368449-87368769
Length
339 bp
Sequences
Splice sites
3' ss Seq
GCCTCTCCTTTTCTTTCCAGACC
3' ss Score
11.1
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGTCTCCAACCAAAGTGCAGCTAGTGGGAGGTGCCCACCGCTGTGAAGGGCGAGTGGAGGTGGAACACAATGGCCAGTGGGGGACTGTGTGTGATGATGGCTGGGACCGGCGTGATGTGGCTGTGGTGTGCCGAGAGCTCAATTGTGGAGCAGTCATCCAAACCCCGCGTGGCGCATCATATCAGCCACCAGCATCAGAGCAAAGAGTTCTTATTCAAGGGGTTGACTGCAACGGAACGGAAGACACGTTGGCTCAATGTGAGCTAAATTACGATGTTTTTGACTGCTCACATGAAGAAGATGCTGGGGCACAGTGTGAGA
Seq A exon
ACCCAGACAGTGACCTCCTCTTCATTCCAGAGGATGTGCGTCTAGTAGATGGCCCGGGGCACTGCCAGGGTCGAGTGGAGGTGCTCCACCAGTCCCAGTGGAGCACTGTGTGTAAAGCAGGCTGGAACTTACAGGTCTCAAAGGTGGTGTGCAGGCAGCTCGGGTGTGGGCGGGCATTACTGACCTACGGAAGCTGCAACAAGAATACTCAGGGCAAAGGACCCATCTGGATGGGCAAGATGTCGTGTTCTGGACAAGAAGCAAACCTTCGGTCTTGCCTTTTGAGTCGTTTGGAGAACAACTGTACCCATGGCGAGGACACATGGATGGAATGTGAAG
Seq C2 exon
ATCCTTTTGAGCTGAAGCTGGTGGGAGGAGACACCCCCTGCTCTGGGAGGTTGGAGGTGCTACACAAGGGTTCCTGGGGCTCTGTCTGTGATGACAACTGGGGAGAAAAGGAGGACCAAGTGGTCTGCAAGCAACTGGGTTGTGGGAAGTCCCTCCATCCATCCCCCAAAACCCGGAAAATCTATGGGCCTGGGGCAGGCCGCATCTGGCTGGATGACGTCAACTGCTCAGGGAAGGAACAGTCTCTGGAGTTCTGCCGGCACAGGTTGTGGGGGTACCACGACTGTACCCACAAGGAAGATGTGGAGGTGATCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015854-'2-3,'2-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=91.7)
A:
PF0053013=SRCR=WD(100=86.0)
C2:
PF0053013=SRCR=WD(100=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCGAGAGCTCAATTGTG
R:
CTTCCCACAACCCAGTTGCTT
Band lengths:
344-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types