RnoEX6010082 @ rn6
Exon Skipping
Gene
ENSRNOG00000023068 | Cd5l
Description
Cd5 molecule-like [Source:RGD Symbol;Acc:1308526]
Coordinates
chr2:186690829-186693818:+
Coord C1 exon
chr2:186690829-186691152
Coord A exon
chr2:186692587-186692910
Coord C2 exon
chr2:186693498-186693818
Length
324 bp
Sequences
Splice sites
3' ss Seq
GCCTCTCCCTTTCTTTCCAGACC
3' ss Score
11.74
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGTCTCCAACTAGAGTGCGGCTAGTGGGAGGCGCCCACCGCTGTGAAGGGCGAGTGGAGGTGAAACACAACGGCCAGTGGGGGACTGTGTGCGATGACGGCTGGGACTTGATTGATGTGTCTGTGGTGTGCCGGGAGCTGAATTGTGGAGCAGCGAAAAAAACCCCGAGTGGTGCATCATATCATCCACCAGCATCAGAAGGGCAAAGCGTTCTTATTCAAGGAGTTGAATGCAGTGGGGCGGAAGACATGCTGGCTCAATGTACGCTAAATTACGATGTTTTTGATTGCTCGCATGCAGAAGATGCTGGGGTACAGTGTGAGA
Seq A exon
ACCCAGACAATCCAGAGAATGTGCGGCTAGTAGAGGGCCTCGGGCGCTGCCAGGGTCGACTGGAGGTGTTCTACCAGGGCCAGTGGAGCACTGTGTGCAAAGCAGGCTGGAACTTACAGGCTTCAAAGGTGGTGTGCAGGCAGCTGGGCTGTGGGCGAGCACTGCTGGCCCACAGATGCTGCAATAAGAATACCCAGGGCAAAGGACCCATCTGGATGAGCAAGATGTCATGTTCTGGACGAGAAGCAAACCTTCAGGACTGCCCTTTCAGTCCTTTGGAGAGCAATTGTACCCATGGCGAGGACACGTGGATGGAATGCGAAG
Seq C2 exon
ATCCCTTTGAGCTGAGGCTGGTAGGAGGAGACACCACCTGCTCTGGGAGGTTGGAGGTGCTGCACAAGGGTTCCTGGGGCTCTGTCTGTGATGACAGCTGGGGAGAAAAGGAGGACCAAGTGGTCTGCAAGCAACTGGGCTGTGGGAAGTCCCTCTTTCCATCCCCTAAAGCCCGCCAAAGCTTCGGGCCTGGGACAGGCCGCATCTGGCTGGATGACGTCAGTTGCTCAGGGAAGGAAGAGTCTCTTGAGCTCTGCCGGCACAGGCTGTGGGGATACCATGATTGCACGCACAAGGAAGATGTGGGCGTGATCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023068-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=91.7)
A:
PF0053013=SRCR=WD(100=89.9)
C2:
PF0053013=SRCR=WD(100=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACGGCTGGGACTTGATTG
R:
TCCTTTTCTCCCCAGCTGTCA
Band lengths:
343-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]