MmuEX6071753 @ mm9
Exon Skipping
Gene
ENSMUSG00000015854 | Cd5l
Description
CD5 antigen-like [Source:MGI Symbol;Acc:MGI:1334419]
Coordinates
chr3:87169712-87172691:+
Coord C1 exon
chr3:87169712-87170032
Coord A exon
chr3:87171463-87171801
Coord C2 exon
chr3:87172371-87172691
Length
339 bp
Sequences
Splice sites
3' ss Seq
GCCTCTCCTTTTCTTTCCAGACC
3' ss Score
11.1
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGTCTCCAACCAAAGTGCAGCTAGTGGGAGGTGCCCACCGCTGTGAAGGGCGAGTGGAGGTGGAACACAATGGCCAGTGGGGGACTGTGTGTGATGATGGCTGGGACCGGCGTGATGTGGCTGTGGTGTGCCGAGAGCTCAATTGTGGAGCAGTCATCCAAACCCCGCGTGGCGCATCATATCAGCCACCAGCATCAGAGCAAAGAGTTCTTATTCAAGGGGTTGACTGCAACGGAACGGAAGACACGTTGGCTCAATGTGAGCTAAATTACGATGTTTTTGACTGCTCACATGAAGAAGATGCTGGGGCACAGTGTGAGA
Seq A exon
ACCCAGACAGTGACCTCCTCTTCATTCCAGAGGATGTGCGTCTAGTAGATGGCCCGGGGCACTGCCAGGGTCGAGTGGAGGTGCTCCACCAGTCCCAGTGGAGCACTGTGTGTAAAGCAGGCTGGAACTTACAGGTCTCAAAGGTGGTGTGCAGGCAGCTCGGGTGTGGGCGGGCATTACTGACCTACGGAAGCTGCAACAAGAATACTCAGGGCAAAGGACCCATCTGGATGGGCAAGATGTCGTGTTCTGGACAAGAAGCAAACCTTCGGTCTTGCCTTTTGAGTCGTTTGGAGAACAACTGTACCCATGGCGAGGACACATGGATGGAATGTGAAG
Seq C2 exon
ATCCTTTTGAGCTGAAGCTGGTGGGAGGAGACACCCCCTGCTCTGGGAGGTTGGAGGTGCTACACAAGGGTTCCTGGGGCTCTGTCTGTGATGACAACTGGGGAGAAAAGGAGGACCAAGTGGTCTGCAAGCAACTGGGTTGTGGGAAGTCCCTCCATCCATCCCCCAAAACCCGGAAAATCTATGGGCCTGGGGCAGGCCGCATCTGGCTGGATGACGTCAACTGCTCAGGGAAGGAACAGTCTCTGGAGTTCTGCCGGCACAGGTTGTGGGGGTACCACGACTGTACCCACAAGGAAGATGTGGAGGTGATCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015854-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=91.7)
A:
PF0053013=SRCR=WD(100=86.0)
C2:
PF0053013=SRCR=WD(100=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCGAGAGCTCAATTGTG
R:
CTTCCCACAACCCAGTTGCTT
Band lengths:
344-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: