BtaEX6014204 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022514 | CD5L
Description
CD5 molecule-like [Source:HGNC Symbol;Acc:HGNC:1690]
Coordinates
chr3:12560597-12562451:+
Coord C1 exon
chr3:12560597-12560635
Coord A exon
chr3:12560688-12560999
Coord C2 exon
chr3:12562131-12562451
Length
312 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTCCCACAATTCCAGGGA
3' ss Score
8.89
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
AGAAAGATTCAGAGTTAGGAGCCCCCTTATGTGGGAAGG
Seq A exon
GGACTGTGAGGCTGGTTGATGGCCCTGGGCGCTGCAAGGGGCGCTTGGAGGTGAAGCACCAAAAGCAATGGGGCACCGTGTGCAAAGCAGGCTGGAATCTCTCAGCTGCGAAGGTGGTGTGCCGGCAACTGGGGTGTGGGAAGGCCACACTGATCAAAAGATGTTGTAACAAGGATACCCAGGGCCAAGGACTCATCTGGCTGAGCAATGTATCATGCTCAGGACAGGAAGAAGACCTTCAACACTGCCTTTCTGGGCTTGAGGGGTATAATAACTGCACCCATGATGAGGATACATGGGTTGAATGTGAAG
Seq C2 exon
ATCCCTTTAAATTGAGGCTGGTAAATGGAGACACCAGCTGCTCTGGAAGACTGGAGGTGCTGCATAAGGGCATATGGGGCTCTGTCTGTGATGACGGCTGGGCGAAAAAGGAGGAGCAGGTGGTGTGCCAGCAACTGGGCTGTGGAAAGCCAATCTTTGTACCTGCCAAAGCACGGAAAAAGTTTGTCCCTGGAAATGGGCGCATCTGGCTAGATGATGTCCATTGCAAAGGGGAAGAGCAGTCCCTGGAGCAGTGTCAGCATAGGTCCTGGGGGTATCATGACTGCAACCACAAGGAAGATGTGGTTGTATTCTGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022514-'8-7,'8-6,10-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(7.2=50.0)
A:
PF0053013=SRCR=WD(100=94.3)
C2:
PF0053013=SRCR=WD(100=92.6)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGGAGCCCCCTTATGTGGG
R:
AGCAGAATACAACCACATCTTCCT
Band lengths:
343-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]