MmuEX6073215 @ mm10
Exon Skipping
Gene
ENSMUSG00000027901 | Dennd2d
Description
DENN/MADD domain containing 2D [Source:MGI Symbol;Acc:MGI:2181193]
Coordinates
chr3:106491226-106495008:+
Coord C1 exon
chr3:106491226-106491366
Coord A exon
chr3:106492429-106492577
Coord C2 exon
chr3:106494831-106495008
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGGTTTTCCTATAGTTC
3' ss Score
9.23
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATACTAGATGAAGTAGAGAAGAGGCATCAGATCTCCATGGCTGTCATCTACCCATTCATGCAAGGTCTCCGAGAGGCAGCCTTTCCTGCACCTGGAAAGACAGTCACCCTTAAGAGCTTCATTCCTGACTCAGGCACAGAG
Seq A exon
TTCATCTCACTGACACGGCCCCTAGACTCCCACCTTGAACACGTGGACTTCAGTGTTCTGCTACACTGTCTCCATTTGGAGCAGATTATTCAGATCTTTGCCTCTGCAGTGCTGGAAAGAAAAATCATCTTTTTGGCAGAGGGTCTCAG
Seq C2 exon
TACCCTGTCTCAGTGTATCCATGCTGCTGCAGCTCTGCTTTACCCATTTAGTTGGGCACACACATACATCCCTGTGGTCCCTGAGAGCCTTCTGGCCACTGTCTGCTGCCCTACCCCCTTCATGGTTGGGGTACAGATGCGCTTCCTGCAGGAGGTTATGGACAGTCCCATGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027901-'15-18,'15-12,18-18=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(24.9=100)
A:
PF0214116=DENN=FE(26.5=100)
C2:
PF0214116=DENN=FE(31.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCATCAGATCTCCATGGCT
R:
CTGTACCCCAACCATGAAGGG
Band lengths:
256-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types