MmuEX6073215 @ mm9
Exon Skipping
Gene
ENSMUSG00000027901 | Dennd2d
Description
DENN/MADD domain containing 2D [Source:MGI Symbol;Acc:MGI:2181193]
Coordinates
chr3:106294144-106297926:+
Coord C1 exon
chr3:106294144-106294284
Coord A exon
chr3:106295347-106295495
Coord C2 exon
chr3:106297749-106297926
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGGTTTTCCTATAGTTC
3' ss Score
9.23
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATACTAGATGAAGTAGAGAAGAGGCATCAGATCTCCATGGCTGTCATCTACCCATTCATGCAAGGTCTCCGAGAGGCAGCCTTTCCTGCACCTGGAAAGACAGTCACCCTTAAGAGCTTCATTCCTGACTCAGGCACAGAG
Seq A exon
TTCATCTCACTGACACGGCCCCTAGACTCCCACCTTGAACACGTGGACTTCAGTGTTCTGCTACACTGTCTCCATTTGGAGCAGATTATTCAGATCTTTGCCTCTGCAGTGCTGGAAAGAAAAATCATCTTTTTGGCAGAGGGTCTCAG
Seq C2 exon
TACCCTGTCTCAGTGTATCCATGCTGCTGCAGCTCTGCTTTACCCATTTAGTTGGGCACACACATACATCCCTGTGGTCCCTGAGAGCCTTCTGGCCACTGTCTGCTGCCCTACCCCCTTCATGGTTGGGGTACAGATGCGCTTCCTGCAGGAGGTTATGGACAGTCCCATGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027901-'10-10,'10-8,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(24.9=100)
A:
PF0214116=DENN=FE(26.5=100)
C2:
PF0214116=DENN=FE(31.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCATCAGATCTCCATGGCT
R:
CTGTACCCCAACCATGAAGGG
Band lengths:
256-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: