RnoEX6010999 @ rn6
Exon Skipping
Gene
ENSRNOG00000017680 | Dennd2d
Description
DENN domain containing 2D [Source:RGD Symbol;Acc:1305120]
Coordinates
chr2:209106478-209110296:+
Coord C1 exon
chr2:209106478-209106618
Coord A exon
chr2:209107704-209107852
Coord C2 exon
chr2:209110119-209110296
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGGTTTTCCTACAGTTC
3' ss Score
10.46
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
ATACTGGATGAAGTAGAGAAGAGACATCAGATCTCCATGGCTGTCATCTACCCATTCATGCAAGGTCTCCGAGAGGCAGCCTTTCCTGCACCTGGAAAGACAGTCACCCTTAAGAGCTTCATTCCTGATTCAGGCACGGAG
Seq A exon
TTCATCTCATTGACACGGCCCCTAGACTCCCACCTTGAACATGTGGACTTCAGTGCTCTGCTGCAATGCCTCCATTTTGAGCAGATTATTCAGATCTTTGCCTCTGCAGTACTTGAAAGAAAGATCATCTTTTTGGCAGAGGGTCTGAG
Seq C2 exon
TACCCTGTCTCAGTGTATCCATGCTGCAGCTGCTCTGCTTTACCCATTTAGTTGGGCACACACATACATCCCGGTGGTCCCTGAGAGCCTTCTGGCCACTGTCTGCTGCCCTACCCCCTTCATGGTTGGGGTACAGATGCGATTCCAGCAGGAGGTTATGGACAGTCCCATGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017680-'13-8,'13-6,14-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(24.9=100)
A:
PF0214116=DENN=FE(26.5=100)
C2:
PF0214116=DENN=FE(31.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATTCATGCAAGGTCTCCG
R:
CTCCTGCTGGAATCGCATCTG
Band lengths:
245-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]