GgaEX6026522 @ galGal3
Exon Skipping
Gene
ENSGALG00000000154 | DENND2D
Description
NA
Coordinates
chr26:1016340-1018493:+
Coord C1 exon
chr26:1016340-1016480
Coord A exon
chr26:1018090-1018238
Coord C2 exon
chr26:1018316-1018493
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGGTGGCTCTCACCCCGCAGCTC
3' ss Score
9.01
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATCCTGGATGAGGTGGAGAAGAGGCGTCAGATCTCCATGGCAGTGATTTACCCCTTCATGCAGGGCCTGCGGGAATCGCCCTTTCCAGCTCCGGGGAAAACCGTCACCATTAAAAGCTTCATCCCCGAGTCGGGCACAGAG
Seq A exon
CTCATTGAGCTCACACGACCTGTGGACGCCCACCTGGAGCACGTGGAGTTCCCAGCGCTGCTCCAGCGCCTCAGCCCCATCCTCATCCTGCACATCTTCGCCTCCGCTGTGCTGGAGCGGCGGCTCATCTTCCTGGCTGAGGAGCTGAG
Seq C2 exon
TGTCCTCTCACAGTGTATCCACGCCGTGGCTGCTCTCCTCTACCCCTTCACGTGGGCTCACACCTACATCCCTGTGGTCCCCGAGTGCCTGCTCGACACCGTCTGCTGCCCCACACCCTTCATGGTTGGCATCCAGAGGCGGCACCTGGAGCGGGTGCTGGAGCAGCCCATGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000154-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(24.9=100)
A:
PF0214116=DENN=FE(26.5=100)
C2:
PF0214116=DENN=FE(31.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAGATCTCCATGGCAGTG
R:
CTGGATGCCAACCATGAAGGG
Band lengths:
253-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]