DreEX6096933 @ danRer10
Exon Skipping
Gene
ENSDARG00000030250 | dennd2db
Description
DENN/MADD domain containing 2Db [Source:ZFIN;Acc:ZDB-GENE-041114-34]
Coordinates
chr22:835353-836140:+
Coord C1 exon
chr22:835353-835493
Coord A exon
chr22:835566-835714
Coord C2 exon
chr22:835969-836140
Length
149 bp
Sequences
Splice sites
3' ss Seq
GGCCCTTTGGTTGCTGTCAGATC
3' ss Score
6.91
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
ATCTTTGATGAGGTGGAGAAGCGCCGGCAGATCTCCACAGCCATGATTTACCCGTTCATGCAGAGTCTGCGGGAGGCACCGCTGCCTTCACCCGGCAGCACCGTCAGCATCAGCAGCTTCATCCCGGACGCCGGCACACAG
Seq A exon
ATCATCCGGCTGACGCGGCCTGCAGACTCCTGGCTGGAGCATGTGGATTTCACTGCGCTTTTCAGCCGTCTGAACGATGAGGAGCTGCTGCTGGTGTTCACCGCTGCTGTGCTGGAGCGACGAATCATCTTCATCTCAGAGGAGCTCAG
Seq C2 exon
CACTCTCTCGCAGGTTCTTCATGCTGTAGCAGCGCTCCTGTATCCATTTGTGTGGCAGCACACGTTTATATCAATCGTTCCTTCAGTTCTGATCGACGTTTGTGAAGCACCGACTCCATACCTGCTGGGTGTTCAGAAGAGCATGATGGGGCTGATCACGGACCACAGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030250-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(25.1=100)
A:
PF0214116=DENN=FE(26.8=100)
C2:
PF0214116=DENN=FE(31.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGATGAGGTGGAGAAGCGC
R:
TGGAGTCGGTGCTTCACAAAC
Band lengths:
256-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]