BtaEX6015923 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020172 | DENND2D
Description
DENN/MADD domain containing 2D [Source:HGNC Symbol;Acc:HGNC:26192]
Coordinates
chr3:32326336-32332130:+
Coord C1 exon
chr3:32326336-32326476
Coord A exon
chr3:32328606-32328754
Coord C2 exon
chr3:32331953-32332130
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGGTTTCCCGACAGTTC
3' ss Score
10.97
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
ATCCTGGATGAAGTGGAAAAGAGGCATCAAATCTCCATGGCCATCATCTACCCATTCATGCAGGGCCTCCGAGAGGCAGCTTTCCCTGCTCCTGGGAAGACTGTCACCCTCAAGAGCTTCATTCCTGACTCAGGCACTGAG
Seq A exon
TTCATTTCCCTGACACGGCCCCTGGATTCCCACCTAGAGCATGTGGATTTTCGTTCTCTCATGCGTTGCCTCAGTTTTGAGCAGATTCTTCAGATCTTTGCCTCTGCAGTGCTGGAAAGAAGAATCATCTTCTTGGCAGAAGGTCTCAG
Seq C2 exon
CACCCTGTCTCAGTGCATCCATGCTACTGCCGCGCTGCTCTACCCCTTCAGCTGGGCCCACACCTACATACCTGTGGTCCCCGAGAGCCTGCTGGGAACTGTCTGCTGCCCCACTCCCTTCATGGTTGGAGTCCAAATGCGCTTCCGGCAGGAGGTTTTGGACAGCCCCATGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020172-'12-7,'12-6,13-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(24.9=100)
A:
PF0214116=DENN=FE(26.5=100)
C2:
PF0214116=DENN=FE(31.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCAAATCTCCATGGCCA
R:
TGGACTCCAACCATGAAGGGA
Band lengths:
254-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]