MmuEX6076356 @ mm10
Exon Skipping
Gene
ENSMUSG00000038677 | Scube3
Description
signal peptide, CUB domain, EGF-like 3 [Source:MGI Symbol;Acc:MGI:3045253]
Coordinates
chr17:28160812-28163070:+
Coord C1 exon
chr17:28160812-28160928
Coord A exon
chr17:28162316-28162438
Coord C2 exon
chr17:28162954-28163070
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATGCTGTCCTTCGTCCCCAGATA
3' ss Score
11.23
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
AAACCTGTGCTGTCAACAACGGAGGCTGCGACAGTAAGTGCCATGATGCAGCGACCGGAGTCCACTGCAGCTGTCCTGTGGGTTTCATGCTGCAGCCAGACAGAAAGACCTGCAAAG
Seq A exon
ATATAGACGAGTGCCGCTTAAACAACGGGGGCTGTGACCACATCTGCCGCAACACAGTGGGCAGCTTCGAGTGCAGCTGCAAGAAGGGCTACAAGCTTCTCATCAACGAAAGGAGCTGCCAGG
Seq C2 exon
ATATAGATGAGTGCTCCTTCGACCGAACCTGTGACCACATGTGTGTCAACACCCCGGGGAGCTTCCAGTGTCTCTGTCATCGTGGCTACCTTCTATATGGTGTCACTCACTGCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038677-'7-23,'7-14,14-23=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGTGCTGTCAACAACGG
R:
GTGAGTGACACCATATAGAAGGTAGC
Band lengths:
226-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types