MmuEX6076357 @ mm9
Exon Skipping
Gene
ENSMUSG00000038677 | Scube3
Description
signal peptide, CUB domain, EGF-like 3 [Source:MGI Symbol;Acc:MGI:3045253]
Coordinates
chr17:28294018-28299383:+
Coord C1 exon
chr17:28294018-28294134
Coord A exon
chr17:28297757-28297873
Coord C2 exon
chr17:28299261-28299383
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACCTACACTTCCCTCAACAGAAA
3' ss Score
9.16
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TGACCTGCAACTATGGTAATGGCGGCTGCCAGCACACCTGCGATGACACGGAGCAGGGTCCTCGGTGCGGCTGCCACGTCAAGTTTGTGCTCCACACCGACGGGAAGACATGCATTG
Seq A exon
AAACCTGTGCTGTCAACAACGGAGGCTGCGACAGTAAGTGCCATGATGCAGCGACCGGAGTCCACTGCAGCTGTCCTGTGGGTTTCATGCTGCAGCCAGACAGAAAGACCTGCAAAG
Seq C2 exon
ATATAGACGAGTGCCGCTTAAACAACGGGGGCTGTGACCACATCTGCCGCAACACAGTGGGCAGCTTCGAGTGCAGCTGCAAGAAGGGCTACAAGCTTCTCATCAACGAAAGGAGCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038677-'5-11,'5-10,7-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACTATGGTAATGGCGGC
R:
CTGGCAGCTCCTTTCGTTGAT
Band lengths:
234-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: