GgaEX6026976 @ galGal4
Exon Skipping
Gene
ENSGALG00000002675 | SCUBE3
Description
signal peptide, CUB domain, EGF-like 3 [Source:HGNC Symbol;Acc:HGNC:13655]
Coordinates
chr26:4085314-4089127:-
Coord C1 exon
chr26:4089080-4089127
Coord A exon
chr26:4086226-4086342
Coord C2 exon
chr26:4085314-4085436
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCCCTCTCCCTGCAGAGA
3' ss Score
13.32
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGGAGAGACACTTCCAGCAACACGTTATCCTTGAGACGTTTTCTAATG
Seq A exon
AGACCTGTGCTGTGAACAACGGGGGCTGTGACAGCAAGTGTCACGACGCGGCCACCGGCGTGCACTGCAGCTGCCCCATGGGCTTCATGCTGCAGCCCGACAGAAAGACCTGCAAAG
Seq C2 exon
ACATCGACGAGTGCCGGCTCAACAACGGCGGCTGCGACCACATCTGCAGGAACACGGTGGGCAGCTTCGAGTGCAGCTGCAAGAAGGGCTACAAACTGCTCATCAACGAGAGGAACTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675-'6-9,'6-8,7-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAGACACTTCCAGCAAC
R:
CTTGGCAGTTCCTCTCGTTGA
Band lengths:
171-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]