GgaEX6026976 @ galGal3
Exon Skipping
Gene
ENSGALG00000002675 | SCUBE3
Description
NA
Coordinates
chr26:3974998-3982191:-
Coord C1 exon
chr26:3982075-3982191
Coord A exon
chr26:3975910-3976026
Coord C2 exon
chr26:3974998-3975120
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCCCTCTCCCTGCAGAGA
3' ss Score
13.32
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TGACGTGCAACTATGGGAACGGCGGCTGCCAGCACACCTGTGATGACACGGACCAGGGCCCCAAGTGTGGCTGCCACGTCAAGTTCTTGCTGCACTCCGACGGCGTCACCTGCATAG
Seq A exon
AGACCTGTGCTGTGAACAACGGGGGCTGTGACAGCAAGTGTCACGACGCGGCCACCGGCGTGCACTGCAGCTGCCCCATGGGCTTCATGCTGCAGCCCGACAGAAAGACCTGCAAAG
Seq C2 exon
ACATCGACGAGTGCCGGCTCAACAACGGCGGCTGCGACCACATCTGCAGGAACACGGTGGGCAGCTTCGAGTGCAGCTGCAAGAAGGGCTACAAACTGCTCATCAACGAGAGGAACTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675-'5-7,'5-6,7-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
PF146701=FXa_inhibition=WD(100=90.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGTGCAACTATGGGAACG
R:
TGGCAGTTCCTCTCGTTGATG
Band lengths:
238-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]